Scorri Autori Unibg
Computing with energy and chemical reactions
2009-01-01 Leporati, Alberto; Besozzi, Daniela; Cazzaniga, Paolo; Pescini, Dario; Ferretti, Claudio
(Tissue) P systems with cell polarity
2009-01-01 Besozzi, Daniela; Busi, Nadia; Cazzaniga, Paolo; Ferretti, Claudio; Leporati, Alberto; Mauri, Giancarlo; Pescini, Dario; Zandron, Claudio
A comparison of genetic algorithms and particle swarm optimization for parameter estimation in stochastic biochemical systems
2009-01-01 Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Pescini, Dario; Vanneschi, Leonardo
A multi-volume approach to stochastic modeling with membrane systems
2009-01-01 Besozzi, Daniela; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo
First Steps Towards a Wet Implementation for τ-DPP
2009-01-01 Pescini, Dario; Cazzaniga, Paolo; Ferretti, Claudio; Mauri, Giancarlo
Stochastic simulations on a grid framework for parameter sweep applications in biological models
2009-01-01 Mosca, Ettore; Merelli, Ivan; Milanesi, Luciano; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo
Modelling spatial heterogeneity and macromolecular crowding with membrane systems
2010-01-01 Mosca, Ettore; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo; Milanesi, Luciano
BioSimWare: A software for the modeling, simulation and analysis of biological systems
2010-01-01 Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Pescini, Dario
A novel variant of P systems for the modelling and simulation of biochemical systems
2010-01-01 Cazzaniga, Paolo; Mauri, Giancarlo; Milanesi, Luciano; Mosca, Ettore; Pescini, Dario
Investigating oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae: the role of feedback control mechanisms
2011-01-01 Besozzi, Daniela; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo; Colombo, Sonia; Martegani, Enzo
The role of Ras modulators and feedback control mechanisms on the establishment of oscillations in the Ras/cAMP/PKA pathway in S. cerevisiae
2011-01-01 Cazzaniga, Paolo; Besozzi, Daniela; Pescini, Dario; Mauri, Giancarlo; Colombo, Sonia; Martegani, Enzo
Grid computing for sensitivity analysis of stochastic biological models
2011-01-01 Merelli, Ivan; Pescini, Dario; Mosca, Ettore; Cazzaniga, Paolo; Maj, Carlo; Mauri, Giancarlo; Milanesi, Luciano
Modeling diffusion in a signal transduction pathway: The use of virtual volumes in p systems
2011-01-01 Besozzi, Daniela; Cazzaniga, Paolo; Cocolo, Stefania; Mauri, Giancarlo; Pescini, Dario
The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae Computational Systems Biology
2012-01-01 Besozzi, Daniela; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo; Colombo, Sonia; Martegani, Enzo
A GPU-based Multi-Swarm PSO Method for Parameter Estimation in Stochastic Biological Systems Exploiting Discrete-Time Target Series
2012-01-01 Nobile, MARCO S.; Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Pescini, Dario
Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs
2012-01-01 Nobile, Marco S.; Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Pescini, Dario
Simulation of the Ras/cAMP/PKA pathway in budding yeast highlights the establishment of stable oscillatory states
2012-01-01 Pescini, Dario; Cazzaniga, Paolo; Besozzi, Daniela; Mauri, Giancarlo; Amigoni, Loredana; Colombo, Sonia; Martegani, Enzo
GPU-powered sensitivity analysis and parameter estimation of a reaction-based model of the Post Replication Repair pathway in yeast
2013-01-01 Cazzaniga, Paolo; Colombo, Riccardo; Nobile, MARCO S.; Pescini, Dario; Mauri, Giancarlo; Besozzi, Daniela
A GPU-powered computational analysis of PCNA ubiquitylation processes involved in UV-induced DNA lesions bypass
2013-01-01 Besozzi, Daniela; Colombo, Riccardo; Cazzaniga, Paolo; Nobile, MARCO S.; Pescini, Dario; Mauri, Giancarlo
Accelerating the computational analysis of biological systems by means of Graphics Processing Units
2013-01-01 Besozzi, Daniela; Cazzaniga, Paolo; Colombo, Riccardo; Mauri, Giancarlo; Nobile, MARCO S.; Pescini, Dario
Data di pubblicazione | Titolo | Autore/i | Tipologia | Documento allegato |
---|---|---|---|---|
1-gen-2009 | Computing with energy and chemical reactions | Leporati, Alberto; Besozzi, Daniela; Cazzaniga, Paolo; Pescini, Dario; Ferretti, Claudio | 1.1 Contributi in rivista - Journal contributions::1.1.01 Articoli/Saggi in rivista - Journal Articles/Essays | |
1-gen-2009 | (Tissue) P systems with cell polarity | Besozzi, Daniela; Busi, Nadia; Cazzaniga, Paolo; Ferretti, Claudio; Leporati, Alberto; Mauri, Giancarlo; Pescini, Dario; Zandron, Claudio | 1.1 Contributi in rivista - Journal contributions::1.1.01 Articoli/Saggi in rivista - Journal Articles/Essays | |
1-gen-2009 | A comparison of genetic algorithms and particle swarm optimization for parameter estimation in stochastic biochemical systems | Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Pescini, Dario; Vanneschi, Leonardo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2009 | A multi-volume approach to stochastic modeling with membrane systems | Besozzi, Daniela; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo | 1.2 Contributi in volume - Book chapters::1.2.01 Contributi in volume (Capitoli o Saggi) - Book Chapters/Essays | |
1-gen-2009 | First Steps Towards a Wet Implementation for τ-DPP | Pescini, Dario; Cazzaniga, Paolo; Ferretti, Claudio; Mauri, Giancarlo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2009 | Stochastic simulations on a grid framework for parameter sweep applications in biological models | Mosca, Ettore; Merelli, Ivan; Milanesi, Luciano; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2010 | Modelling spatial heterogeneity and macromolecular crowding with membrane systems | Mosca, Ettore; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo; Milanesi, Luciano | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2010 | BioSimWare: A software for the modeling, simulation and analysis of biological systems | Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Pescini, Dario | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2010 | A novel variant of P systems for the modelling and simulation of biochemical systems | Cazzaniga, Paolo; Mauri, Giancarlo; Milanesi, Luciano; Mosca, Ettore; Pescini, Dario | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2011 | Investigating oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae: the role of feedback control mechanisms | Besozzi, Daniela; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo; Colombo, Sonia; Martegani, Enzo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2011 | The role of Ras modulators and feedback control mechanisms on the establishment of oscillations in the Ras/cAMP/PKA pathway in S. cerevisiae | Cazzaniga, Paolo; Besozzi, Daniela; Pescini, Dario; Mauri, Giancarlo; Colombo, Sonia; Martegani, Enzo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.03 Testi di poster in atti di convegno - Conference posters | |
1-gen-2011 | Grid computing for sensitivity analysis of stochastic biological models | Merelli, Ivan; Pescini, Dario; Mosca, Ettore; Cazzaniga, Paolo; Maj, Carlo; Mauri, Giancarlo; Milanesi, Luciano | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2011 | Modeling diffusion in a signal transduction pathway: The use of virtual volumes in p systems | Besozzi, Daniela; Cazzaniga, Paolo; Cocolo, Stefania; Mauri, Giancarlo; Pescini, Dario | 1.1 Contributi in rivista - Journal contributions::1.1.01 Articoli/Saggi in rivista - Journal Articles/Essays | |
1-gen-2012 | The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae Computational Systems Biology | Besozzi, Daniela; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo; Colombo, Sonia; Martegani, Enzo | 1.1 Contributi in rivista - Journal contributions::1.1.01 Articoli/Saggi in rivista - Journal Articles/Essays | |
1-gen-2012 | A GPU-based Multi-Swarm PSO Method for Parameter Estimation in Stochastic Biological Systems Exploiting Discrete-Time Target Series | Nobile, MARCO S.; Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Pescini, Dario | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2012 | Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs | Nobile, Marco S.; Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Pescini, Dario | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.02 Abstract in atti di convegno - Conference abstracts | |
1-gen-2012 | Simulation of the Ras/cAMP/PKA pathway in budding yeast highlights the establishment of stable oscillatory states | Pescini, Dario; Cazzaniga, Paolo; Besozzi, Daniela; Mauri, Giancarlo; Amigoni, Loredana; Colombo, Sonia; Martegani, Enzo | 1.1 Contributi in rivista - Journal contributions::1.1.01 Articoli/Saggi in rivista - Journal Articles/Essays | |
1-gen-2013 | GPU-powered sensitivity analysis and parameter estimation of a reaction-based model of the Post Replication Repair pathway in yeast | Cazzaniga, Paolo; Colombo, Riccardo; Nobile, MARCO S.; Pescini, Dario; Mauri, Giancarlo; Besozzi, Daniela | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.03 Testi di poster in atti di convegno - Conference posters | |
1-gen-2013 | A GPU-powered computational analysis of PCNA ubiquitylation processes involved in UV-induced DNA lesions bypass | Besozzi, Daniela; Colombo, Riccardo; Cazzaniga, Paolo; Nobile, MARCO S.; Pescini, Dario; Mauri, Giancarlo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.03 Testi di poster in atti di convegno - Conference posters | |
1-gen-2013 | Accelerating the computational analysis of biological systems by means of Graphics Processing Units | Besozzi, Daniela; Cazzaniga, Paolo; Colombo, Riccardo; Mauri, Giancarlo; Nobile, MARCO S.; Pescini, Dario | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.03 Testi di poster in atti di convegno - Conference posters |
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