Scorri Autori Unibg
cupSODA: a CUDA-powered simulator of mass-action kinetics
2013-01-01 Nobile, MARCO S.; Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Pescini, Dario
GPU-powered simulation methodologies for biological systems
2013-01-01 Besozzi, Daniela; Caravagna, G.; Cazzaniga, Paolo; Nobile, MARCO S.; Pescini, Dario; Re, Alessandro
The foundation of Evolutionary Petri Nets
2013-01-01 Nobile, MARCO S.; Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo
Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization
2013-01-01 Nobile, MARCO S.; Besozzi, Daniela; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo
In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae
2013-01-01 Amara, Flavio; Colombo, Riccardo; Cazzaniga, Paolo; Pescini, Dario; CSIKCÁSZ NAGY, Attila; MUZI FALCONI, Marco; Besozzi, Daniela; Plevani, Paolo
Modeling and simulation of the blood coagulation cascade
2014-01-01 Bellini, Matteo; Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Nobile, MARCO S.
Molecular diffusion and compartmentalization in signal transduction pathways: an application of membrane systems to the study of bacterial chemotaxis
2014-01-01 Cazzaniga, Paolo; Besozzi, Daniela; Pescini, Dario; Mauri, Giancarlo
A memetic hybrid method for the Molecular Distance Geometry Problem with incomplete information
2014-01-01 Nobile, MARCO S.; Citrolo, A. G.; Cazzaniga, Paolo; Besozzi, Daniela; Mauri, Giancarlo
Simulation and analysis of the blood coagulation cascade accelerated on GPU
2014-01-01 Bellini, Matteo; Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Nobile, MARCO S.
Massive exploration of perturbed conditions of the blood coagulation cascade through GPU parallelization
2014-01-01 Cazzaniga, Paolo; Nobile, MARCO S.; Besozzi, Daniela; Bellini, Matteo; Mauri, Giancarlo
cuTauLeaping: a GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systems
2014-01-01 Nobile, MARCO S.; Cazzaniga, Paolo; Besozzi, Daniela; Pescini, Dario; Mauri, Giancarlo
Computational strategies for a system-level understanding of metabolism
2014-01-01 Cazzaniga, Paolo; Damiani, Chiara; Besozzi, Daniela; Colombo, Riccardo; Nobile, MARCO S.; Gaglio, Daniela; Pescini, Dario; Molinari, Sara; Mauri, Giancarlo; Alberghina, Lilia; Vanoni, Marco
GPU-accelerated simulations of mass-action kinetics models with cupSODA
2014-01-01 Nobile, MARCO S.; Cazzaniga, Paolo; Besozzi, Daniela; Mauri, Giancarlo
GPU computing for accelerated analyses of a large-scale model of cell fate in cancer cells
2015-01-01 Nobile, Marco S.; Harris, Leonard; Shockley, Erin; Pino, James C.; Cazzaniga, Paolo; Besozzi, Daniela; Lopez, Carlos F.; Mauri, Giancarlo
GPU-powered sensitivity analysis of a large-scale model of death cell signaling and proliferation in cancer cells
2015-01-01 Nobile, Marco S.; Harris, Leonard; Shockley, Erin; Cazzaniga, Paolo; Besozzi, Daniela; Lopez, Carlos F.; Mauri, Giancarlo
Towards a GPU-powered toolbox for the computational analysis of biological systems
2015-01-01 Cazzaniga, Paolo; Nobile, Marco S.; Besozzi, Daniela; Citrolo, Andrea G.; Tangherloni, Andrea; Donizetti, Alberto; Mauri, Giancarlo
The impact of particles initialization in PSO: Parameter estimation as a case in point
2015-01-01 Cazzaniga, Paolo; Nobile, Marco S.; Besozzi, Daniela
Proactive Particles in Swarm Optimization: A self-tuning algorithm based on Fuzzy Logic
2015-01-01 Nobile, Marco S.; Pasi, Gabriella; Cazzaniga, Paolo; Besozzi, Daniela; Colombo, Riccardo; Mauri, Giancarlo
Parallelizing Biochemical Stochastic Simulations: A Comparison of GPUs and Intel Xeon Phi Processors
2015-01-01 Cazzaniga, Paolo; Ferrara, F.; Nobile, M. S.; Besozzi, D.; Mauri, G.
GPU-powered Bat Algorithm for the parameter estimation of biochemical kinetic values
2016-01-01 Tangherloni, Andrea; Nobile, Marco S.; Cazzaniga, Paolo
Data di pubblicazione | Titolo | Autore/i | Tipologia | Documento allegato |
---|---|---|---|---|
1-gen-2013 | cupSODA: a CUDA-powered simulator of mass-action kinetics | Nobile, MARCO S.; Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Pescini, Dario | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2013 | GPU-powered simulation methodologies for biological systems | Besozzi, Daniela; Caravagna, G.; Cazzaniga, Paolo; Nobile, MARCO S.; Pescini, Dario; Re, Alessandro | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2013 | The foundation of Evolutionary Petri Nets | Nobile, MARCO S.; Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2013 | Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization | Nobile, MARCO S.; Besozzi, Daniela; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2013 | In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae | Amara, Flavio; Colombo, Riccardo; Cazzaniga, Paolo; Pescini, Dario; CSIKCÁSZ NAGY, Attila; MUZI FALCONI, Marco; Besozzi, Daniela; Plevani, Paolo | 1.1 Contributi in rivista - Journal contributions::1.1.01 Articoli/Saggi in rivista - Journal Articles/Essays | |
1-gen-2014 | Modeling and simulation of the blood coagulation cascade | Bellini, Matteo; Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Nobile, MARCO S. | 1.1 Contributi in rivista - Journal contributions::1.1.01 Articoli/Saggi in rivista - Journal Articles/Essays | |
1-gen-2014 | Molecular diffusion and compartmentalization in signal transduction pathways: an application of membrane systems to the study of bacterial chemotaxis | Cazzaniga, Paolo; Besozzi, Daniela; Pescini, Dario; Mauri, Giancarlo | 1.2 Contributi in volume - Book chapters::1.2.01 Contributi in volume (Capitoli o Saggi) - Book Chapters/Essays | |
1-gen-2014 | A memetic hybrid method for the Molecular Distance Geometry Problem with incomplete information | Nobile, MARCO S.; Citrolo, A. G.; Cazzaniga, Paolo; Besozzi, Daniela; Mauri, Giancarlo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2014 | Simulation and analysis of the blood coagulation cascade accelerated on GPU | Bellini, Matteo; Besozzi, Daniela; Cazzaniga, Paolo; Mauri, Giancarlo; Nobile, MARCO S. | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2014 | Massive exploration of perturbed conditions of the blood coagulation cascade through GPU parallelization | Cazzaniga, Paolo; Nobile, MARCO S.; Besozzi, Daniela; Bellini, Matteo; Mauri, Giancarlo | 1.1 Contributi in rivista - Journal contributions::1.1.01 Articoli/Saggi in rivista - Journal Articles/Essays | |
1-gen-2014 | cuTauLeaping: a GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systems | Nobile, MARCO S.; Cazzaniga, Paolo; Besozzi, Daniela; Pescini, Dario; Mauri, Giancarlo | 1.1 Contributi in rivista - Journal contributions::1.1.01 Articoli/Saggi in rivista - Journal Articles/Essays | |
1-gen-2014 | Computational strategies for a system-level understanding of metabolism | Cazzaniga, Paolo; Damiani, Chiara; Besozzi, Daniela; Colombo, Riccardo; Nobile, MARCO S.; Gaglio, Daniela; Pescini, Dario; Molinari, Sara; Mauri, Giancarlo; Alberghina, Lilia; Vanoni, Marco | 1.1 Contributi in rivista - Journal contributions::1.1.01 Articoli/Saggi in rivista - Journal Articles/Essays | |
1-gen-2014 | GPU-accelerated simulations of mass-action kinetics models with cupSODA | Nobile, MARCO S.; Cazzaniga, Paolo; Besozzi, Daniela; Mauri, Giancarlo | 1.1 Contributi in rivista - Journal contributions::1.1.01 Articoli/Saggi in rivista - Journal Articles/Essays | |
1-gen-2015 | GPU computing for accelerated analyses of a large-scale model of cell fate in cancer cells | Nobile, Marco S.; Harris, Leonard; Shockley, Erin; Pino, James C.; Cazzaniga, Paolo; Besozzi, Daniela; Lopez, Carlos F.; Mauri, Giancarlo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.03 Testi di poster in atti di convegno - Conference posters | |
1-gen-2015 | GPU-powered sensitivity analysis of a large-scale model of death cell signaling and proliferation in cancer cells | Nobile, Marco S.; Harris, Leonard; Shockley, Erin; Cazzaniga, Paolo; Besozzi, Daniela; Lopez, Carlos F.; Mauri, Giancarlo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.02 Abstract in atti di convegno - Conference abstracts | |
1-gen-2015 | Towards a GPU-powered toolbox for the computational analysis of biological systems | Cazzaniga, Paolo; Nobile, Marco S.; Besozzi, Daniela; Citrolo, Andrea G.; Tangherloni, Andrea; Donizetti, Alberto; Mauri, Giancarlo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.03 Testi di poster in atti di convegno - Conference posters | |
1-gen-2015 | The impact of particles initialization in PSO: Parameter estimation as a case in point | Cazzaniga, Paolo; Nobile, Marco S.; Besozzi, Daniela | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2015 | Proactive Particles in Swarm Optimization: A self-tuning algorithm based on Fuzzy Logic | Nobile, Marco S.; Pasi, Gabriella; Cazzaniga, Paolo; Besozzi, Daniela; Colombo, Riccardo; Mauri, Giancarlo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2015 | Parallelizing Biochemical Stochastic Simulations: A Comparison of GPUs and Intel Xeon Phi Processors | Cazzaniga, Paolo; Ferrara, F.; Nobile, M. S.; Besozzi, D.; Mauri, G. | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations | |
1-gen-2016 | GPU-powered Bat Algorithm for the parameter estimation of biochemical kinetic values | Tangherloni, Andrea; Nobile, Marco S.; Cazzaniga, Paolo | 1.4 Contributi in atti di convegno - Contributions in conference proceedings::1.4.01 Contributi in atti di convegno - Conference presentations |
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